Class: Robot::Generator::TecanV3

Inherits:
TecanV2 show all
Includes:
Behaviours::TecanDefault
Defined in:
app/models/robot/generator/tecan_v3.rb

Overview

Handles picking file generation for Tecan robots with reusing tips for buffer addition steps

Constant Summary

Constants inherited from TecanV2

Robot::Generator::TecanV2::NUM_BUFFER_CHANNELS

Instance Attribute Summary

Attributes inherited from Base

#batch, #ctrl_barcode_index, #dest_barcode_index, #picking_data, #plate_barcode, #source_barcode_index

Instance Method Summary collapse

Methods inherited from TecanV2

#as_text, #filename

Methods inherited from Base

#initialize, #total_volume, #type

Constructor Details

This class inherits a constructor from Robot::Generator::Base

Instance Method Details

#buffer_separator ⇒ String

Adds a 'Break' command between the buffer and sample addition steps.

Returns:

  • (String) —

    the buffer separator string

See Also:

  • Robot::Generator::TecanV2#buffer_separator


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# File 'app/models/robot/generator/tecan_v3.rb', line 51

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#buffers(data_object) ⇒ String

Groups buffer addition steps by channel, adds 'Comment' lines between steps, appends a 'Wash' command at the end of each channel group. This enables reusing tips for buffer addition steps within each channel.

rubocop:disable Metrics/AbcSize,Metrics/MethodLength

Parameters:

  • data_object (Hash) —

    the picking data object

Returns:

  • (String) —

    the buffer addition steps string

See Also:

  • Behaviours::TecanDefault#buffers


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# File 'app/models/robot/generator/tecan_v3.rb', line 16

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end