Module: UnderRepWellCommentsToBroadcast

Included in:
Batch
Defined in:
app/models/under_rep_well_comments_to_broadcast.rb

Overview

This module encapsulates logic for identifying and generating comment data related to “under-represented” wells within a released batch. Works for pipelines where all requests (library prep, multiplexing, sequencing) share a single submission (e.g., WGS). Other pipelines may differ, as they can involve multiple submissions at different stages. Left as-is for this WGS proof of concept; future extensions may require refactoring.

It: - Extracts requests containing “under_represented” metadata. - Builds structured UnderRepWellComment objects that represent per-well comments to be serialized or broadcasted. - Provides a comments method used by CommentIO for serialization.

Defined Under Namespace

Classes: UnderRepWellComment

Constant Summary collapse

UNDER_REPRESENTED_KEY = 
'under_represented'

Instance Method Summary collapse

Instance Method Details

#comments ⇒ Array<UnderRepWellComment>

Entry point used by CommentIO to retrieve the comments to serialize.

Returns:



68
69
70
 
# File 'app/models/under_rep_well_comments_to_broadcast.rb', line 68

def comments
  under_represented_well_comments || []
end

#request_with_under_represented_wells ⇒ Array<Request>

Returns all requests related to the batch that include a poly_metadatum entry with the UNDER_REPRESENTED key.

Returns:

  • (Array<Request>) —

    an array of requests that contain under-represented metadata.



46
47
48
49
50
 
# File 'app/models/under_rep_well_comments_to_broadcast.rb', line 46

def request_with_under_represented_wells
  submissions.flat_map(&:requests).select do |r|
    r.poly_metadata.any? { |pol| pol.key == UNDER_REPRESENTED_KEY }
  end
end

#under_represented_well_comments ⇒ Array<UnderRepWellComment>

Builds all UnderRepWellComment objects for requests within the batch that have under-represented wells. The resulting list aggregates comments across multiple requests and associated assets.

Returns:



59
60
61
62
63
 
# File 'app/models/under_rep_well_comments_to_broadcast.rb', line 59

def under_represented_well_comments
  request_with_under_represented_wells.flat_map do |request|
    build_comments_for_request(request)
  end.compact
end