Class: UatActions::TestSubmission

Inherits:
UatActions
  • Object
show all
Includes:
Shared::StudyHelper
Defined in:
app/uat_actions/uat_actions/test_submission.rb

Overview

Will construct submissions Currently VERY basic

Constant Summary collapse

ERROR_SUBMISSION_TEMPLATE_DOES_NOT_EXIST = 
"Submission template '%s' does not exist."
ERROR_PLATE_DOES_NOT_EXIST = 
'Plate with barcode %s does not exist.'
ERROR_PLATE_PURPOSE_DOES_NOT_EXIST = 
"Plate purpose '%s' does not exist."
ERROR_LIBRARY_TYPE_DOES_NOT_EXIST = 
"Library type '%s' does not exist."
ERROR_PRIMER_PANEL_DOES_NOT_EXIST = 
"Primer panel '%s' does not exist."
ERROR_STUDY_DOES_NOT_EXIST = 
"Study '%s' does not exist."
ERROR_PROJECT_DOES_NOT_EXIST = 
"Project '%s' does not exist."

Class Method Summary collapse

Instance Method Summary collapse

Class Method Details

.compatible_submission_templates ⇒ Object 



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# File 'app/uat_actions/uat_actions/test_submission.rb', line 144

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

.default ⇒ UatActions::TestSubmission

Returns a default copy of the UatAction which will be used to fill in the form

Returns:



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# File 'app/uat_actions/uat_actions/test_submission.rb', line 140

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

Instance Method Details

#perform ⇒ Boolean

Generates a plate submission for the given template. A partial submission is possible if the number_of_wells_to_submit form field has been set.

rubocop:todo Metrics/MethodLength

Returns:

  • (Boolean) —

    Returns true if the action was successful, false otherwise



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# File 'app/uat_actions/uat_actions/test_submission.rb', line 160

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end