Class: UatActions::GenerateQcResults

Inherits:
UatActions
  • Object
show all
Defined in:
app/uat_actions/uat_actions/generate_qc_results.rb

Overview

Will generate qc results for a given plate

Constant Summary collapse

ATTRIBUTE_UNITS = 
{
  'molarity' => 'nM',
  'volume' => 'ul',
  'concentration' => 'ng/ul',
  'gender_markers' => 'bases',
  'loci_passed' => 'bases',
  'RIN' => 'RIN',
  'primer_panel' => 'panels',
  'loci_tested' => 'bases',
  'gel_pass' => 'status',
  'live_cell_count' => 'cells/ml',
  'viability' => '%'
}.freeze

Class Method Summary collapse

Instance Method Summary collapse

Class Method Details

.default ⇒ UatActions::GeneratePlateConcentrations

Returns a default copy of the UatAction which will be used to fill in the form, with values for the units, and min and max concentrations.

Returns:



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# File 'app/uat_actions/uat_actions/generate_qc_results.rb', line 60

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

Instance Method Details

#perform ⇒ Object 



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# File 'app/uat_actions/uat_actions/generate_qc_results.rb', line 70

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end