Class: UatActions::GeneratePlates

Inherits:
UatActions
  • Object
show all
Includes:
Shared::StudyHelper
Defined in:
app/uat_actions/uat_actions/generate_plates.rb

Overview

Will construct plates with well_count wells filled with samples rubocop:disable Metrics/ClassLength

Direct Known Subclasses

GenerateTaggedPlates

Constant Summary collapse

ERROR_WELL_COUNT_EXCEEDS_PLATE_SIZE = 
"Well count of %s exceeds the plate size of %s for the plate purpose '%s'."
ERROR_PLATE_PURPOSE_DOES_NOT_EXIST = 
"Plate purpose '%s' does not exist."

Class Method Summary collapse

Instance Method Summary collapse

Class Method Details

.default ⇒ Object 



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# File 'app/uat_actions/uat_actions/generate_plates.rb', line 76

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

Instance Method Details

#perform ⇒ Object 



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# File 'app/uat_actions/uat_actions/generate_plates.rb', line 87

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end