Module: SubmissionsHelper

Defined in:
app/helpers/submissions_helper.rb

Overview

Helper methods for presenting submission related information

Instance Method Summary collapse

Instance Method Details

#asset_group_select(asset_groups) ⇒ Object

rubocop:todo Metrics/MethodLength



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# File 'app/helpers/submissions_helper.rb', line 63

def asset_group_select(asset_groups) # rubocop:todo Metrics/MethodLength
  prompt =
    case asset_groups.size
    when 0
      'There are no Asset Groups associcated with this Study'
    else
      'Please select an asset group for this order.'
    end

  collection_select(
    :submission,
    :asset_group_id,
    asset_groups,
    :id,
    :name,
    { prompt: },
    class: 'submission_asset_group_id required form-control',
    disabled: asset_groups.empty?
  )
end

#field_input_tag(field_info, values: {}, name_format: '%s', enforce_required: true) ⇒ Object 



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# File 'app/helpers/submissions_helper.rb', line 18

def field_input_tag(field_info, values: {}, name_format: '%s', enforce_required: true)
  case field_info.kind
  when 'Selection'
    field_selection_tag(values, field_info, name_format, enforce_required)
  when 'Text'
    field_text_tag(values, field_info, name_format, enforce_required)
  when 'Numeric'
    field_number_tag(values, field_info, name_format, enforce_required)
    # Fall back to a text field
  else
    field_text_tag(values, field_info, name_format, enforce_required)
  end
end

#order_input_label(field_info) ⇒ Object

<label for=“submission_order_params_field_info_key”>field_info.display_name/label>



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# File 'app/helpers/submissions_helper.rb', line 6

def order_input_label(field_info)
  label('submission[order_params]', field_info.key, field_info.display_name, class: 'form-label')
end

#order_input_tag(order, field_info) ⇒ Object

Returns a either a text input or a selection tag based on the ‘kind’ of the order parameter passed in. field_info is expected to be FieldInfo [sic]



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# File 'app/helpers/submissions_helper.rb', line 13

def order_input_tag(order, field_info)
  request_options = order&.request_options || {}
  field_input_tag(field_info, values: request_options, name_format: 'submission[order_params][%s]')
end

#order_sample_names(order) ⇒ Object

rubocop:enable Metrics/AbcSize, Metrics/MethodLength



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# File 'app/helpers/submissions_helper.rb', line 120

def order_sample_names(order)
  order.assets.map(&:aliquots).flatten.map(&:sample).map(&:name).join(', ')
end

#projects_select(form, projects) ⇒ Object

rubocop:todo Metrics/MethodLength



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# File 'app/helpers/submissions_helper.rb', line 44

def projects_select(form, projects) # rubocop:todo Metrics/MethodLength
  prompt =
    case projects.count
    when 0
      'There are no valid projects available'
    else
      'Please select a Project for this Submission...'
    end
  form.collection_select(
    :project_name,
    projects,
    :name,
    :name,
    { prompt: },
    disabled: true,
    class: 'submission_project_name custom-select'
  )
end

#request_description(presenter, request_type) ⇒ Object 



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# File 'app/helpers/submissions_helper.rb', line 124

def request_description(presenter, request_type)
  request_type_name = request_type.name.titleize

  return request_type_name unless request_type.request_class_name.match?(/SequencingRequest$/)

  tag.em(pluralize(presenter.lanes_of_sequencing, 'Lane') + ' of ') + request_type_name
end

#studies_select(form, studies) ⇒ Object

rubocop:todo Metrics/MethodLength



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# File 'app/helpers/submissions_helper.rb', line 32

def studies_select(form, studies) # rubocop:todo Metrics/MethodLength
  prompt =
    case studies.count
    when 0
      'You are not managing any Studies at this time'
    else
      'Please select a Study for this Submission...'
    end

  form.collection_select(:study_id, studies, :id, :name, { prompt: }, disabled: true, class: 'study_id custom-select')
end

#submission_link(submission, options) ⇒ Object 



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# File 'app/helpers/submissions_helper.rb', line 132

def submission_link(submission, options)
  link_text = tag.strong(submission.name) << ' ' << badge(submission.state, type: 'submission-state')
  link_to(link_text, submission_path(submission), options)
end

#submission_status_message(submission) ⇒ Object

rubocop:todo Metrics/MethodLength, Metrics/AbcSize



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# File 'app/helpers/submissions_helper.rb', line 85

def submission_status_message(submission) # rubocop:todo Metrics/CyclomaticComplexity
  case submission.state
  when 'building'
    display_user_guide(
      'This submission is still open for editing, further orders can still be added...',
      edit_submission_path(submission)
    ) + button_to('Edit Submission', edit_submission_path(submission), method: :get, class: 'button')
  when 'pending'
    display_user_guide('Your submission is currently pending.') +
      tag.p(
        # rubocop:todo Layout/LineLength
        'It should be processed approximately 10 minutes after you have submitted it, however sometimes this may take longer.'
        # rubocop:enable Layout/LineLength
      )
  when 'processing'
    display_user_guide('Your submission is currently being processed.  This should take no longer than five minutes.')
  when 'failed'
    display_user_error(
      raw(
        # rubocop:todo Layout/LineLength
        "<h3>Your submission has failed:</h3><p> #{h((submission.message || 'No failure reason recorded').lines.first)} </p>"
        # rubocop:enable Layout/LineLength
      )
    )
  when 'ready'
    alert(:success) { raw('Your submission has been <strong>processed</strong>.') }
  when 'cancelled'
    alert(:info) { raw('Your submission has been <strong>cancelled</strong>.') }
  else
    alert(:danger) { 'Your submission is in an unknown state (contact support).' }
  end
end