Module: SubmissionSerializer

Defined in:
lib/submission_serializer.rb

Overview

Provides a means of serializing and serializing submission templates. Example serialization: { :name=>“Template Name”, :submission_class_name=>“LinearSubmission”, :superceded_at=>nil, :product_line=>“Product Line Name”, :product_catalogue=>“Product Catalogue Name”, :submission_parameters=>{ :request_types=>[“library_creation”, “sequencing”], :workflow=>“short_read_sequencing”, :order_role=>“ILC” } }

Constant Summary collapse

STRAIGHT_CLONE = 
%w[name submission_class_name].freeze
SP_STRAIGHT_CLONE = 
%i[info_differential asset_input_methods request_options].freeze

Class Method Summary collapse

Class Method Details

.construct!(hash) ⇒ Object

rubocop:todo Metrics/PerceivedComplexity, Metrics/MethodLength, Metrics/AbcSize



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# File 'lib/submission_serializer.rb', line 61

def self.construct!(hash) # rubocop:todo Metrics/CyclomaticComplexity
  st = {}

  STRAIGHT_CLONE.each { |key| st[key.to_sym] = hash[key.to_sym] }

  st[:product_line_id] = ProductLine.find_or_create_by(name: hash[:product_line]).id if hash[:product_line]
  if hash[:product_catalogue]
    st[:product_catalogue_id] = ProductCatalogue.find_or_create_by(name: hash[:product_catalogue]).id
  end
  st[:superceded_by_id] = if hash.has_key?(:superceded_by)
    SubmissionTemplate.find_by(name: hash[:superceded_by]).try(:id) || -2
  else
    hash[:superceded_by_id] || -1
  end
  st[:superceded_at] = DateTime.parse(hash[:superceded_at]) if hash.has_key?(:superceded_at)

  sp = st[:submission_parameters] = {}
  ensp = hash[:submission_parameters]

  SP_STRAIGHT_CLONE.each { |key| sp[key] = ensp[key] if ensp[key].present? }

  if sp[:request_options] && sp[:request_options][:initial_state]
    new_initial = sp[:request_options][:initial_state].transform_keys { |k| RequestType.find_by(key: k).id }
    sp[:request_options][:initial_state] = new_initial
  end

  sp[:request_type_ids_list] = ensp[:request_types].map do |rtk|
    [RequestType.find_by(key: rtk).try(:id) || raise(StandardError, "Could not find #{rtk}")]
  end
  sp[:order_role_id] = OrderRole.find_or_create_by(role: ensp[:order_role]).id if ensp[:order_role]

  SubmissionTemplate.create!(st)
end

.serialize(st) ⇒ Object

rubocop:todo Metrics/PerceivedComplexity, Metrics/MethodLength, Metrics/AbcSize



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# File 'lib/submission_serializer.rb', line 22

def self.serialize(st) # rubocop:todo Metrics/CyclomaticComplexity
  attributes = st.attributes
  new_attributes = {}

  STRAIGHT_CLONE.each do |key|
    new_attributes[key.to_sym] = attributes[key].duplicable? ? attributes[key].dup : attributes[key]
  end

  if attributes['product_line_id']
    new_attributes[:product_line] = ProductLine.find(attributes['product_line_id']).name
  end
  if attributes['product_catalogue_id']
    new_attributes[:product_catalogue] = ProductCatalogue.find(attributes['product_catalogue_id']).name
  end
  if attributes['superceded_by_id'] > 0
    new_attributes[:superceded_by] = SubmissionTemplate.find(attributes['superceded_by_id']).name
  end
  new_attributes[:superceded_by_id] = attributes['superceded_by_id']
  new_attributes[:superceded_at] = attributes['superceded_at'].to_s if attributes['superceded_at']

  sp = attributes['submission_parameters'] || {}
  ensp = new_attributes[:submission_parameters] = {}

  SP_STRAIGHT_CLONE.each { |key| ensp[key] = sp[key] if sp[key].present? }

  if ensp[:request_options] && ensp[:request_options][:initial_state]
    new_initial = ensp[:request_options][:initial_state].transform_keys { |k| RequestType.find(k).key }
    ensp[:request_options][:initial_state] = new_initial
  end

  ensp[:request_types] = sp[:request_type_ids_list].flatten.map { |id| RequestType.find(id).key }
  ensp[:order_role] = OrderRole.find(sp[:order_role_id]).role if sp[:order_role_id]

  new_attributes
end