Class: Study::Metadata

Inherits:
Object
  • Object
show all
Defined in:
app/models/study.rb

Overview

rubocop:disable Metrics/ClassLength

Instance Method Summary collapse

Instance Method Details

#data_release_prevention_reason_other? ⇒ Boolean

Returns:

  • (Boolean) 


697
698
699
 
# File 'app/models/study.rb', line 697

def data_release_prevention_reason_other?
  data_release_prevention_reason == DATA_RELEASE_PREVENTION_REASON_OTHER
end

#data_release_strategy_must_be_managed? ⇒ Boolean

Returns:

  • (Boolean) 


750
751
752
 
# File 'app/models/study.rb', line 750

def data_release_strategy_must_be_managed?
  Flipper.enabled?(:y24_052_enable_data_release_timing_validation) && data_release_strategy.present? && managed?
end

#data_release_timing_must_be_never? ⇒ Boolean

Returns:

  • (Boolean) 


736
737
738
739
 
# File 'app/models/study.rb', line 736

def data_release_timing_must_be_never?
  Flipper.enabled?(:y24_052_enable_data_release_timing_validation) && data_release_strategy.present? &&
    strategy_not_applicable?
end

#data_release_timing_must_be_open? ⇒ Boolean

Returns:

  • (Boolean) 


746
747
748
 
# File 'app/models/study.rb', line 746

def data_release_timing_must_be_open?
  Flipper.enabled?(:y24_052_enable_data_release_timing_validation) && data_release_strategy.present? && open?
end

#data_release_timing_must_not_be_never? ⇒ Boolean

Returns:

  • (Boolean) 


741
742
743
744
 
# File 'app/models/study.rb', line 741

def data_release_timing_must_not_be_never?
  Flipper.enabled?(:y24_052_enable_data_release_timing_validation) && data_release_strategy.present? &&
    !strategy_not_applicable?
end

#delay_until_publication? ⇒ Boolean

Returns:

  • (Boolean) 


705
706
707
 
# File 'app/models/study.rb', line 705

def delay_until_publication?
  data_release_timing == DATA_RELEASE_TIMING_PUBLICATION
end

#delayed_for_long_time? ⇒ Boolean

Returns:

  • (Boolean) 


701
702
703
 
# File 'app/models/study.rb', line 701

def delayed_for_long_time?
  DATA_RELEASE_DELAY_PERIODS.include?(data_release_delay_period)
end

#delayed_for_other_reasons? ⇒ Boolean

Returns:

  • (Boolean) 


693
694
695
 
# File 'app/models/study.rb', line 693

def delayed_for_other_reasons?
  [DATA_RELEASE_DELAY_FOR_OTHER, OLD_DATA_RELEASE_DELAY_FOR_OTHER].include?(data_release_delay_reason)
end

#delayed_release? ⇒ Boolean

Returns:

  • (Boolean) 


685
686
687
 
# File 'app/models/study.rb', line 685

def delayed_release?
  data_release_timing == DATA_RELEASE_TIMING_DELAYED
end

#managed? ⇒ Boolean

Returns:

  • (Boolean) 


677
678
679
 
# File 'app/models/study.rb', line 677

def managed?
  data_release_strategy == DATA_RELEASE_STRATEGY_MANAGED
end

#never_release? ⇒ Boolean

Returns:

  • (Boolean) 


689
690
691
 
# File 'app/models/study.rb', line 689

def never_release?
  data_release_timing == DATA_RELEASE_TIMING_NEVER
end

#non_standard_agreement? ⇒ Boolean

Returns:

  • (Boolean) 


768
769
770
 
# File 'app/models/study.rb', line 768

def non_standard_agreement?
  data_release_standard_agreement == NO
end

#open? ⇒ Boolean

Returns:

  • (Boolean) 


673
674
675
 
# File 'app/models/study.rb', line 673

def open?
  data_release_strategy == DATA_RELEASE_STRATEGY_OPEN
end

#remove_x_and_autosomes? ⇒ Boolean

Returns:

  • (Boolean) 


669
670
671
 
# File 'app/models/study.rb', line 669

def remove_x_and_autosomes?
  remove_x_and_autosomes == YES
end

#sanity_check_y_separation ⇒ Object 



754
755
756
757
758
759
 
# File 'app/models/study.rb', line 754

def sanity_check_y_separation
  if remove_x_and_autosomes?
    errors.add(:separate_y_chromosome_data, 'cannot be selected with remove x and autosomes.')
  end
  !remove_x_and_autosomes?
end

#snp_child_studies ⇒ Object 



814
815
816
817
818
 
# File 'app/models/study.rb', line 814

def snp_child_studies
  return nil if snp_study_id.nil?

  self.class.where(snp_parent_study_id: snp_study_id).includes(:study).map(&:study)
end

#snp_parent_study ⇒ Object 



808
809
810
811
812
 
# File 'app/models/study.rb', line 808

def snp_parent_study
  return nil if snp_parent_study_id.nil?

  self.class.where(snp_study_id: snp_parent_study_id).includes(:study).try(:study)
end

#strategy_not_applicable? ⇒ Boolean

Returns:

  • (Boolean) 


681
682
683
 
# File 'app/models/study.rb', line 681

def strategy_not_applicable?
  data_release_strategy == DATA_RELEASE_STRATEGY_NOT_APPLICABLE
end

#study_type_valid? ⇒ Boolean

Returns:

  • (Boolean) 


772
773
774
 
# File 'app/models/study.rb', line 772

def study_type_valid?
  errors.add(:study_type, 'is not specified') if study_type.name == 'Not specified'
end

#valid_policy_url? ⇒ Boolean

rubocop:todo Metrics/MethodLength

Returns:

  • (Boolean) 


777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
 
# File 'app/models/study.rb', line 777

def valid_policy_url? # rubocop:todo Metrics/AbcSize
  # Rails 2.3 has no inbuilt URL validation, but rather than rolling our own, we'll
  # use the inbuilt ruby URI parser, a bit like here:
  # http://www.simonecarletti.com/blog/2009/04/validating-the-format-of-an-url-with-rails/
  return true if dac_policy.blank?

  dac_policy.insert(0, 'http://') unless dac_policy.include?('://') # Add an http protocol if no protocol is defined
  begin
    uri = URI.parse(dac_policy)
    if configatron.invalid_policy_url_domains.include?(uri.host)
      errors.add(
        :dac_policy,
        ": #{dac_policy} is not an acceptable URL. Please ensure you haven't provided an internal URL."
      )
    end
  rescue URI::InvalidURIError
    errors.add(:dac_policy, ": #{dac_policy} is not a valid URL")
  end
end