Class: SequencescapeExcel::SpecialisedField::DualIndexTagWell

Inherits:
Object
  • Object
show all
Includes:
Base, ValueRequired, ValueToUpcase
Defined in:
app/sequencescape_excel/sequencescape_excel/specialised_field/dual_index_tag_well.rb

Overview

DualIndexTagWell

Constant Summary collapse

PLATE_SIZE = 
96

Instance Attribute Summary collapse

Attributes included from Base

#sample_manifest_asset, #value

Instance Method Summary collapse

Methods included from ValueToUpcase

#value=

Instance Attribute Details

#sf_dual_index_tag_set ⇒ Object

Returns the value of attribute sf_dual_index_tag_set.



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# File 'app/sequencescape_excel/sequencescape_excel/specialised_field/dual_index_tag_well.rb', line 17

def sf_dual_index_tag_set
  @sf_dual_index_tag_set
end

Instance Method Details

#dual_index_tag_set ⇒ Object

From the validation in DualIndexTagSet, we know this tag set is a valid dual index tag set with a visible tag group and visible tag2 group



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# File 'app/sequencescape_excel/sequencescape_excel/specialised_field/dual_index_tag_well.rb', line 43

def dual_index_tag_set
  @dual_index_tag_set = TagSet.find(sf_dual_index_tag_set.tag_set_id) if sf_dual_index_tag_set&.tag_set_id
end

#link(other_fields) ⇒ Object 



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# File 'app/sequencescape_excel/sequencescape_excel/specialised_field/dual_index_tag_well.rb', line 37

def link(other_fields)
  self.sf_dual_index_tag_set = other_fields[SequencescapeExcel::SpecialisedField::DualIndexTagSet]
end

#tag2_group_id ⇒ Object 



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# File 'app/sequencescape_excel/sequencescape_excel/specialised_field/dual_index_tag_well.rb', line 51

def tag2_group_id
  @tag2_group_id ||= ::TagGroup.find_by(id: dual_index_tag_set.tag2_group_id, visible: true).id
end

#tag_group_id ⇒ Object 



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# File 'app/sequencescape_excel/sequencescape_excel/specialised_field/dual_index_tag_well.rb', line 47

def tag_group_id
  @tag_group_id ||= ::TagGroup.find_by(id: dual_index_tag_set.tag_group_id, visible: true).id
end

#update(_attributes = {}) ⇒ Object 



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# File 'app/sequencescape_excel/sequencescape_excel/specialised_field/dual_index_tag_well.rb', line 26

def update(_attributes = {})
  return unless valid?

  # NB. asset here is a well, and a the well_has_single_aliquot? validation ensures there is only one aliquot
  stock_aliquot = asset.aliquots.first

  # Update all downstream aliquots as well as current aliquot
  matching_aliquots = identify_all_matching_aliquots(stock_aliquot)
  update_all_relevant_aliquots(matching_aliquots, tag, tag2)
end