Class: SequencescapeExcel::SpecialisedField::BioscanControlType

Inherits:
ControlType
  • Object
show all
Includes:
Base
Defined in:
app/sequencescape_excel/sequencescape_excel/specialised_field/bioscan_control_type.rb

Overview

Same behaviour as base control type but using a different range definition for the allowed control types used in Bioscan. We also need to validate the supplier name starts with CONTROL_ when a control type is set. We validate well restriction if control type is set: 'pcr positive' or 'pcr negative' cannot be in H12 'lysate negative' control (if present) can only be in H12

Instance Attribute Summary collapse

Attributes included from Base

#sample_manifest_asset, #value

Instance Method Summary collapse

Methods included from Base

#update

Methods inherited from ControlType

#check_control_type_matches_enum, #update

Instance Attribute Details

#supplier_name ⇒ Object

Returns the value of attribute supplier_name.



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# File 'app/sequencescape_excel/sequencescape_excel/specialised_field/bioscan_control_type.rb', line 16

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#well ⇒ Object

Returns the value of attribute well.



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# File 'app/sequencescape_excel/sequencescape_excel/specialised_field/bioscan_control_type.rb', line 16

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

Instance Method Details



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# File 'app/sequencescape_excel/sequencescape_excel/specialised_field/bioscan_control_type.rb', line 21

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end