Class: SampleManifest::TubeRackBehaviour::Core

Inherits:
SharedTubeBehaviour::Base show all
Includes:
CoreBehaviour::NoSpecializedValidation, CoreBehaviour::StockAssets
Defined in:
app/models/sample_manifest/tube_rack_behaviour.rb

Overview

Specifies behaviour for generation of Tube Rack Manifests Ends up being included in SampleManifest model because is instantiated in CoreBehaviour

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods included from CoreBehaviour::StockAssets

#generate_sample_and_aliquot, #stocks?, #tag_depth_for_sample

Methods included from CoreBehaviour::NoSpecializedValidation

#specialized_fields, #validate_specialized_fields

Methods inherited from SharedTubeBehaviour::Base

#details_array, #updated_by!

Methods included from CoreBehaviour::Shared

#details, #generate_sanger_ids, included

Constructor Details

#initialize(manifest) ⇒ Core

Returns a new instance of Core.



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# File 'app/models/sample_manifest/tube_rack_behaviour.rb', line 12

def initialize(manifest)
  @manifest = manifest
  @tubes = []
end

Instance Attribute Details

#tubes ⇒ Object (readonly)

Returns the value of attribute tubes.



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# File 'app/models/sample_manifest/tube_rack_behaviour.rb', line 10

def tubes
  @tubes
end

Instance Method Details

#acceptable_purposes ⇒ Object 



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# File 'app/models/sample_manifest/tube_rack_behaviour.rb', line 22

def acceptable_purposes
  Tube::Purpose.where(target_type: SampleTube)
end

#acceptable_rack_purposes ⇒ Object 



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# File 'app/models/sample_manifest/tube_rack_behaviour.rb', line 26

def acceptable_rack_purposes
  TubeRack::Purpose.where(target_type: TubeRack)
end

#default_purpose ⇒ Object 



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# File 'app/models/sample_manifest/tube_rack_behaviour.rb', line 30

def default_purpose
  Tube::Purpose.standard_sample_tube
end

#default_tube_rack_purpose ⇒ Object 



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# File 'app/models/sample_manifest/tube_rack_behaviour.rb', line 34

def default_tube_rack_purpose
  TubeRack::Purpose.standard_tube_rack
end

#generate ⇒ Object 



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# File 'app/models/sample_manifest/tube_rack_behaviour.rb', line 17

def generate
  desired_number_of_tubes = count * @manifest.tube_rack_purpose.size
  @tubes = generate_tubes(purpose, desired_number_of_tubes)
end

#included_resources ⇒ Object

when uploading the manifest, this specifies which resources are queried and stored in the Cache accessed through sample_manifest.sample_manifest_assets.includes(<resources below>)



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# File 'app/models/sample_manifest/tube_rack_behaviour.rb', line 40

def included_resources
  [{ sample: :sample_metadata, asset: %i[labware aliquots barcodes] }]
end