Class: Robot::Verification::Base

Inherits:
Object
  • Object
show all
Defined in:
app/models/robot/verification/base.rb

Overview

Base class for handling bed verification for picking robots

Direct Known Subclasses

SourceDestBeds, SourceDestControlBeds

Instance Attribute Summary collapse

Instance Method Summary collapse

Instance Attribute Details

#errors ⇒ Object (readonly)

rubocop:todo Metrics/ClassLength



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# File 'app/models/robot/verification/base.rb', line 5

def errors
  @errors
end

Instance Method Details

#all_picks(batch, max_beds) ⇒ Object

Returns all pick information by destination_bed barcode }}

Examples:

{ 'DN3R' => {
 1 => [{'DN3R'=>1},{'DN1S'=>1, 'DN2T'=>2}, {}]

Parameters:

  • batch (Batch) —

    The batch to get the pick-list for

  • max_beds (Integer) —

    The max_beds for plates on the robot



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# File 'app/models/robot/verification/base.rb', line 66

def all_picks(batch, max_beds)
  # @note No optimization yet.
  batch
    .output_plates
    .each_with_object({}) do |plate, store|
      store[plate.machine_barcode] = pick_number_to_expected_layout(batch, plate.machine_barcode, max_beds)
    end
end

#pick_number_to_expected_layout(batch, destination_plate_barcode, max_beds) ⇒ Object

Returns a hash of { pick_number => layout_data_object }, for a batch and a specific destination plate pick_number is a sequential number, starting at 1 layout_data_object is an array of hashes: 1st Element: Hash of destination plate barcodes and their sort position 2nd Element: Hash of source plate barcodes and their sort position 3rd Element: Hash of control plate barcodes and their sort position when appropriate. (nil otherwise) @example [‘DN3R’=>1,‘DN2T’=>2, {}] There will only be more than one pick if the number of source plates exceed the max plates allowed on the robot and therefore more than one pick is needed to transfer from all the wells onto the destination plate



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# File 'app/models/robot/verification/base.rb', line 52

def pick_number_to_expected_layout(batch, destination_plate_barcode, max_beds)
  generate_picking_data_hash(batch, destination_plate_barcode, max_beds).transform_values do |data_object|
    layout_data_object(data_object)
  end
end

#pick_numbers(batch, destination_plate_barcode, max_beds) ⇒ Array<String>

Note:

Added as I refactor the batches/_assets.html.erb page. Currently just wraps pick_number_to_expected_layout and as a result performs a lot of unnecessary work.

Returns an array of all pick numbers associated with the corresponding batch and plate_barcode

Parameters:

  • batch (Batch) —

    The Batch to get pick numbers for

  • destination_plate_barcode (String) —

    The barcode of the destination plate

  • max_beds (Integer) —

    The max_beds for plates on the robot

Returns:

  • (Array<String>) —

    Array of pick numbers associated with the batch/plate



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# File 'app/models/robot/verification/base.rb', line 39

def pick_numbers(batch, destination_plate_barcode, max_beds)
  pick_number_to_expected_layout(batch, destination_plate_barcode, max_beds).keys
end

#record_plate_types(plate_types_params) ⇒ Object

rubocop:enable Metrics/AbcSize, Metrics/MethodLength, Metrics/PerceivedComplexity



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# File 'app/models/robot/verification/base.rb', line 112

def record_plate_types(plate_types_params)
  plate_types_params.each do |plate_barcode, plate_type|
    next if plate_barcode.blank? || plate_type.blank?

    plate = Plate.with_barcode(plate_barcode).first or
      raise "Unable to locate plate #{plate_barcode.inspect} for robot verification"
    plate.plate_type = plate_type
    plate.save!
  end
end

#valid_submission?(params) ⇒ Boolean

rubocop:todo Metrics/PerceivedComplexity, Metrics/MethodLength, Metrics/AbcSize

Returns:

  • (Boolean) 


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# File 'app/models/robot/verification/base.rb', line 76

def valid_submission?(params) # rubocop:todo Metrics/CyclomaticComplexity
  destination_plate_barcode = params[:barcodes][:destination_plate_barcode]
  batch = Batch.find_by(id: params[:batch_id])
  robot = Robot.find_by(id: params[:robot_id])
  user = User.find_by(id: params[:user_id])
  pick_number = params[:pick_number]

  @errors = []
  @errors << "Could not find batch #{params[:batch_id]}" if batch.nil?
  @errors << 'Could not find robot' if robot.nil?
  @errors << 'Could not find user' if user.nil?
  @errors << 'No destination barcode specified' if destination_plate_barcode.blank?
  @errors << 'Could not determine pick number' if pick_number.blank?
  return false unless @errors.empty?

  expected_plate_layout = robot.pick_number_to_expected_layout(batch, destination_plate_barcode)[pick_number.to_i]

  if valid_plate_locations?(params, batch, robot, expected_plate_layout)
    batch.events.create(
      message: I18n.t('bed_verification.layout.valid', plate_barcode: destination_plate_barcode),
      created_by: user.
    )
  else
    batch.events.create(
      message: I18n.t('bed_verification.layout.invalid', plate_barcode: destination_plate_barcode),
      created_by: user.
    )
    @errors << 'Bed layout invalid'
    return false
  end

  true
end

#validate_barcode_params(barcode_hash) ⇒ Object

rubocop:todo Metrics/PerceivedComplexity, Metrics/MethodLength, Metrics/AbcSize



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# File 'app/models/robot/verification/base.rb', line 8

def validate_barcode_params(barcode_hash) # rubocop:todo Metrics/CyclomaticComplexity
  return yield('No barcodes specified') if barcode_hash.nil?

  if barcode_hash[:batch_barcode].blank? || !Batch.valid_barcode?(barcode_hash[:batch_barcode])
    yield('Worksheet barcode invalid')
  end
  if barcode_hash[:robot_barcode].blank? || !Robot.valid_barcode?(barcode_hash[:robot_barcode])
    yield('Robot barcode invalid')
  end
  if barcode_hash[:user_barcode].blank? || !User.find_with_barcode_or_swipecard_code(barcode_hash[:user_barcode])
    yield('User barcode invalid')
  end
  if barcode_hash[:destination_plate_barcode].blank? ||
       !Plate.with_barcode(barcode_hash[:destination_plate_barcode]).exists?
    yield('Destination plate barcode invalid')
  end
end