Module: Robot::Generator::Behaviours::HamiltonDefault

Included in:
Hamilton
Defined in:
app/models/robot/generator/behaviours/hamilton_default.rb

Overview

Module with the file generation functionality for Hamilton robots

Constant Summary collapse

COLUMN_HEADERS = 
%w[
  SourcePlateID
  SourceWellID
  SourcePlateType
  SourcePlateVolume
  DestinationPlateID
  DestinationWellID
  DestinationPlateType
  DestinationPlateVolume
  WaterVolume
].freeze

Instance Method Summary collapse

Instance Method Details

#mapping(data_object = picking_data) ⇒ Object

Formats values in the data object into output rows for the file

Raises:

  • (ArgumentError) 


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# File 'app/models/robot/generator/behaviours/hamilton_default.rb', line 18

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end