Class: ReceptaclesController

Inherits:
ApplicationController show all
Defined in:
app/controllers/receptacles_controller.rb

Overview

View information about Receptacle

See Also:

Constant Summary

Constants included from FlashTruncation

FlashTruncation::STRING_OVERHEAD

Instance Method Summary collapse

Methods inherited from ApplicationController

#block_api_access, #evil_parameter_hack!, #extract_header_info, #set_cache_disabled!

Methods included from FlashTruncation

#max_flash_size, #truncate_flash, #truncate_flash_array

Instance Method Details

#close ⇒ Object 



77
78
79
80
81
82
83
84
85
 
# File 'app/controllers/receptacles_controller.rb', line 77

def close
  @asset.closed = !@asset.closed
  @asset.save
  respond_to do |format|
    flash[:notice] = @asset.closed ? "Receptacle #{@asset.name} was closed." : "Receptacle #{@asset.name} was opened."
    format.html { redirect_to(receptacle_path(@asset)) }
    format.xml { head :ok }
  end
end

#create_request ⇒ Object

rubocop:todo Metrics/MethodLength



141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
 
# File 'app/controllers/receptacles_controller.rb', line 141

def create_request # rubocop:todo Metrics/AbcSize
  @request_type = RequestType.find(params[:request_type_id])
  @study = Study.find(params[:study_id]) if params[:cross_study_request].blank?
  @project = Project.find(params[:project_id]) if params[:cross_project_request].blank?

  request_options = params.fetch(:request, {}).fetch(:request_metadata_attributes, {})
  request_options[:multiplier] = { @request_type.id => params[:count].to_i } if params[:count].present?
  submission = Submission.new(priority: params[:priority], name: @study.try(:name), user: current_user)

  # Despite its name, this is actually an order.
  resubmission_order =
    ReRequestSubmission.new(
      study: @study,
      project: @project,
      user: current_user,
      assets: [@asset],
      request_types: [@request_type.id],
      request_options: request_options.to_unsafe_h,
      submission: submission,
      comments: params[:comments]
    )
  resubmission_order.save!
  submission.built!

  respond_to do |format|
    flash[:notice] = 'Created request'

    format.html { redirect_to receptacle_path(@asset) }
    format.json { render json: submission.requests, status: :created }
  end
rescue Submission::ProjectValidation::Error, ActiveRecord::RecordNotFound, ActiveRecord::RecordInvalid => e
  respond_to do |format|
    # Using 'flash' instead of 'flash.now' to ensure the message persists after the redirect.
    # See: https://guides.rubyonrails.org/action_controller_overview.html#the-flash
    flash[:error] = e.message.truncate(2000, separator: ' ')
    format.html { redirect_to new_request_for_current_asset }
    format.json { render json: e.message, status: :unprocessable_entity }
  end
end

#edit ⇒ Object 



47
48
49
 
# File 'app/controllers/receptacles_controller.rb', line 47

def edit
  @valid_purposes_options = @asset.compatible_purposes.pluck(:name, :id)
end

#history ⇒ Object 



51
52
53
 
# File 'app/controllers/receptacles_controller.rb', line 51

def history
  respond_to { |format| format.html }
end

#index ⇒ Object

rubocop:todo Metrics/AbcSize, Metrics/MethodLength



12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
 
# File 'app/controllers/receptacles_controller.rb', line 12

def index # rubocop:todo Metrics/AbcSize, Metrics/MethodLength
  if params[:study_id]
    @study = Study.find(params[:study_id])
    @assets = @study.assets_through_aliquots.order(created_at: :desc).page(params[:page])
  else
    @assets = Receptacle.page(params[:page])
  end

  respond_to do |format|
    format.html
    if params[:study_id]
      format.xml { render xml: @study.assets_through_requests.to_xml }
    elsif params[:sample_id]
      format.xml { render xml: Sample.find(params[:sample_id]).assets.to_xml }
    end
  end
end

#lookup ⇒ Object

rubocop:enable Metrics/MethodLength



183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
 
# File 'app/controllers/receptacles_controller.rb', line 183

def lookup # rubocop:todo Metrics/AbcSize, Metrics/MethodLength
  return unless params[:asset] && params[:asset][:barcode]

  @assets = Labware.with_barcode(params[:asset][:barcode]).limit(50).page(params[:page])

  if @assets.size == 1
    redirect_to @assets.first
  elsif @assets.empty?
    flash.now[:error] = "No asset found with barcode #{params[:asset][:barcode]}"
    respond_to do |format|
      format.html { render action: 'lookup' }
      format.xml { render xml: @assets.to_xml }
    end
  else
    respond_to do |format|
      format.html { render action: 'index' }
      format.xml { render xml: @assets.to_xml }
    end
  end
end

#new_request ⇒ Object 



124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
 
# File 'app/controllers/receptacles_controller.rb', line 124

def new_request
  @request_types = RequestType.standard.active.applicable_for_asset(@asset)

  # In rare cases the user links in to the 'new request' page
  # with a specific study specified. In even rarer cases this may
  # conflict with the assets primary study.
  # ./features/7711055_new_request_links_broken.feature:29
  # This resolves the issue, but the code could do with a significant
  # refactor. I'm delaying this currently as we NEED to get SS434 completed.
  # 1. This should probably be RequestsController::new
  # 2. We should use Request.new(...) and form helpers
  # 3. This will allow us to instance_variable_or_id_param helpers.
  @study = params[:study_id] ? Study.find(params[:study_id]) : @asset.studies.first
  @project = @asset.projects.first || @asset.studies.first&.projects&.first
end

#print ⇒ Object 



87
88
89
90
91
92
93
94
95
 
# File 'app/controllers/receptacles_controller.rb', line 87

def print
  if @asset.printable?
    @printable = @asset.printable_target
    @direct_printing = (@asset.printable_target == @asset)
  else
    flash[:error] = "#{@asset.display_name} does not have a barcode so a label can not be printed."
    redirect_to receptacle_path(@asset)
  end
end

#print_assets ⇒ Object 



109
110
111
112
113
114
115
116
117
 
# File 'app/controllers/receptacles_controller.rb', line 109

def print_assets
  print_job = LabelPrinter::PrintJob.new(params[:printer], LabelPrinter::Label::AssetRedirect, printables: @asset)
  if print_job.execute
    flash[:notice] = print_job.success
  else
    flash[:error] = print_job.errors.full_messages.join('; ')
  end
  redirect_to receptacle_path(@asset)
end

#print_labels ⇒ Object 



97
98
99
100
101
102
103
104
105
106
107
 
# File 'app/controllers/receptacles_controller.rb', line 97

def print_labels
  print_job =
    LabelPrinter::PrintJob.new(params[:printer], LabelPrinter::Label::AssetRedirect, printables: params[:printables])
  if print_job.execute
    flash[:notice] = print_job.success
  else
    flash[:error] = print_job.errors.full_messages.join('; ')
  end

  redirect_to phi_x_url
end

#show ⇒ Object

rubocop:todo Metrics/MethodLength



30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
 
# File 'app/controllers/receptacles_controller.rb', line 30

def show # rubocop:todo Metrics/MethodLength
  @page_name = @asset.display_name
  @source_plates = @asset.source_plates
  respond_to do |format|
    format.html do
      @aliquots =
        if @asset.is_a?(AliquotIndexer::Indexable)
          @asset.aliquots.include_summary # NPG Aliquot Indexing
        else
          @asset.aliquots.include_summary.paginate(page: params[:page], per_page: 384)
        end
    end
    format.xml
    format.json { render json: @asset }
  end
end

#show_plate ⇒ Object 



119
120
121
122
 
# File 'app/controllers/receptacles_controller.rb', line 119

def show_plate
  @asset = Plate.find(params[:id])
  @page_name = @asset.display_name
end

#summary ⇒ Object 



72
73
74
75
 
# File 'app/controllers/receptacles_controller.rb', line 72

def summary
  @summary = UiHelper::Summary.new(per_page: 25, page: params[:page])
  @summary.load_asset(@asset)
end

#update ⇒ Object

rubocop:todo Metrics/AbcSize, Metrics/MethodLength



55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
 
# File 'app/controllers/receptacles_controller.rb', line 55

def update # rubocop:todo Metrics/AbcSize, Metrics/MethodLength
  respond_to do |format|
    if @asset.update(asset_params.merge(params.to_unsafe_h.fetch(:lane, {})))
      flash[:notice] = 'Receptacle was successfully updated.'
      if params[:lab_view]
        format.html { redirect_to(action: :lab_view, barcode: @asset.human_barcode) }
      else
        format.html { redirect_to(action: :show, id: @asset.id) }
        format.xml { head :ok }
      end
    else
      format.html { render action: 'edit' }
      format.xml { render xml: @asset.errors, status: :unprocessable_entity }
    end
  end
end