Class: Pulldown::Requests::IscLibraryRequest

Inherits:
LibraryCreation
  • Object
show all
Includes:
PreCapturePool::Poolable, BaitLibraryRequest
Defined in:
app/models/pulldown/requests/isc_library_request.rb

Overview

Indexed Sequence Capture Samples are tagged, pooled to together in pre-capture pools then they are subject to sequence capture, which enriches specific sections of DNA. This allows separation of DNA by species, or focusing on the exome (coding-regions)

Direct Known Subclasses

IscLibraryRequestPart, ReIscLibraryRequest

Instance Method Summary collapse

Methods included from PreCapturePool::Poolable

included

Methods included from BaitLibraryRequest

included

Instance Method Details

#update_pool_information(pool_information) ⇒ Object 



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# File 'app/models/pulldown/requests/isc_library_request.rb', line 15

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end