Class: PrimerPanel

Inherits:
ApplicationRecord show all
Includes:
ActiveModel::Validations, SharedBehaviour::Named
Defined in:
app/models/primer_panel.rb

Overview

A primer panel is a set of primers used in a genotyping by sequencing assay. These primers bind to known regions of DNA, localised near SNPs (Single Nucleotide polymorphisms) to allow them to be targeted by short read Sequencing.

Author:

  • Genome Research Ltd.

Instance Method Summary collapse

Methods included from SharedBehaviour::Named

included

Methods inherited from ApplicationRecord

alias_association, convert_labware_to_receptacle_for, find_by_id_or_name, find_by_id_or_name!

Methods included from Squishify

extended

Instance Method Details

#summary_hash ⇒ Hash

A summary of the primer panel behaviour, suitable for embedding in eg. pool information via the API

Returns:

  • (Hash) —

    A hash containing all necessary information



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# File 'app/models/primer_panel.rb', line 30

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end