Class: PlatePurpose::Input

Inherits:
PlatePurpose
  • Object
show all
Defined in:
app/models/plate_purpose/input.rb

Overview

Note:

Limber should probably make decisions about plate state itself. This would increase flexibility, such as by allowing library-manifest plates to pass straight in to the pipeline.

Input Plate purposes are the initial stock plates passing into external piplines. They have special behaviour governing their state. This essentially makes sure that all non-empty wells on a plate have requests out of them before the plate it 'passed'. This is intended to ensure that submissions have been correctly built before a plate has processed.

  • Input plates are passed when all sample containing wells have requests out of them

Constant Summary collapse

UNREADY_STATE = 
'pending'
READY_STATE = 
'passed'
WELL_STATE_PRIORITY = 
%w[pending started passed failed cancelled].freeze

Instance Method Summary collapse

Instance Method Details

#state_of(plate) ⇒ Object 



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# File 'app/models/plate_purpose/input.rb', line 21

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end