Class: PickList::RecordCache::ByLabware

Inherits:
PickList::RecordCache show all
Defined in:
app/models/pick_list/record_cache.rb

Overview

Pick-list cache where the source_receptacles are indicated indirectly via source_labware_id: or source_labware_barcode: A pick will be generated for all aliquot containing receptacles in the labware

Constant Summary collapse

KEYS = 
%i[source_labware_id source_labware_barcode study_id project_id].freeze

Constants inherited from PickList::RecordCache

LABWARE_KEYS, RECEPTACLE_KEYS

Instance Method Summary collapse

Methods inherited from PickList::RecordCache

#add, #initialize

Constructor Details

This class inherits a constructor from PickList::RecordCache

Instance Method Details

#convert(entry) ⇒ Object 



38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
 
# File 'app/models/pick_list/record_cache.rb', line 38

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#receptacles_for(source_labware_id, source_labware_barcode) ⇒ Object 



78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
 
# File 'app/models/pick_list/record_cache.rb', line 78

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#source_receptacle_by_labware_barcode(barcode) ⇒ Object

This is a little complicated. We can easily find receptacles by the labware barcode, but the problem is the labware itself may have more than one barcode associated with it. If we then group by barcode, which one do we use? The select here adds a found_barcode attribute to the returned record, which matches the barcode we originally looked up the well by. As we're about to use the exact same barcode to pull the information back out the cache, we're fine.



66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
 
# File 'app/models/pick_list/record_cache.rb', line 66

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#source_receptacle_by_labware_id(id) ⇒ Object 



48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
 
# File 'app/models/pick_list/record_cache.rb', line 48

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end