Module: Heron::Factories::Concerns::CoordinatesSupport

Included in:
Plate, TubeRack
Defined in:
app/models/heron/factories/concerns/coordinates_support.rb

Overview

A coordinate is the location identifier for a well or tube inside a plate or rack This module adds validation and processing utilities for this type of identifiers. Eg: A01, A1, F12, etc...

Constant Summary collapse

LOCATION_REGEXP = 
/[A-Z][0-9]{0,1}[0-9]/

Instance Method Summary collapse

Instance Method Details

#coordinate_valid?(coordinate) ⇒ Boolean

Returns:

  • (Boolean) 


16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
 
# File 'app/models/heron/factories/concerns/coordinates_support.rb', line 16

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#unpad_coordinate(coordinate) ⇒ Object 



12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
 
# File 'app/models/heron/factories/concerns/coordinates_support.rb', line 12

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end