Module: HasPolyMetadata

Extended by:
ActiveSupport::Concern
Included in:
Batch
Defined in:
app/models/concerns/has_poly_metadata.rb

Instance Method Summary collapse

Instance Method Details

#get_poly_metadata(key) ⇒ String?

Returns the value of the PolyMetaDatum with the given key.

Parameters:

  • key (String) —

    The key of the PolyMetaDatum to retrieve.

Returns:

  • (String, nil) —

    The value of the PolyMetaDatum, or nil if it does not exist.



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# File 'app/models/concerns/has_poly_metadata.rb', line 35

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#set_poly_metadata(key, value) ⇒ void

This method returns an undefined value.

Sets a PolyMetaDatum for the given key and value. If value is present, it will create or update the PolyMetaDatum with the given key and value, otherwise it will destroy the PolyMetaDatum with the given key if that exists. NB: this is because PolyMetaDatum validations prevent key duplication and blank values, although there are no such DB constraints.

Parameters:

  • key (String) —

    The key of the PolyMetaDatum to set.

  • value (String) —

    The value of the PolyMetaDatum to set. If nil or empty, the PolyMetaDatum will be destroyed.



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# File 'app/models/concerns/has_poly_metadata.rb', line 19

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end