Class: Api::V2::TagLayoutTemplateResource

Inherits:
BaseResource
  • Object
show all
Defined in:
app/resources/api/v2/tag_layout_template_resource.rb

Overview

Note:

This resource is immutable: its endpoint will not accept POST, PATCH, or DELETE requests.

Note:

Access this resource via the /api/v2/tag_layout_templates/ endpoint.

Provides a JSON:API representation of TagLayoutTemplate

This resource represents a TagLayoutTemplate which defines the layout and walking algorithm used during the indexing of tags for labware or objects. Think of it as a partially created TagLayout, defining only the tag group that will be used and the actual TagLayout implementation that will do the work.

This resource is read-only and can only be accessed via GET requests. It cannot be modified or deleted.

For more information about JSON:API see the JSON:API Specifications or look at the JSONAPI::Resources package for Sequencescape's implementation of the JSON:API standard.

Examples:

GET request for all TagLayoutTemplate resources

GET /api/v2/tag_layout_templates/

GET request for a TagLayoutTemplate with ID 123

GET /api/v2/tag_layout_templates/123/

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods inherited from BaseResource

apply_includes, creatable_fields, default_includes, #fetchable_fields, inclusions, resolve_relationship_names_to_relations, updatable_fields

Instance Attribute Details

#direction ⇒ String (readonly)

Note:

This attribute is read-only.

The algorithm that defines the direction of the tag layout. This attribute specifies the walking direction during tag indexing.

Returns:

  • (String) —

    The name of the algorithm defining the direction of the layout.



69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
 
# File 'app/resources/api/v2/tag_layout_template_resource.rb', line 69

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#name ⇒ String (readonly)

Note:

This attribute is read-only.

The display name of the tag layout template.

Returns:

  • (String) —

    The name given to the tag layout template.



62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
 
# File 'app/resources/api/v2/tag_layout_template_resource.rb', line 62

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#tag2_group ⇒ Api::V2::TagGroupResource (readonly)

Note:

This relationship is read-only and may not be applicable during single indexing.

The secondary tag group associated with the tag layout template. This relationship is used during dual indexing, but will not be found during single indexing.

Returns:



46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
 
# File 'app/resources/api/v2/tag_layout_template_resource.rb', line 46

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#tag_group ⇒ Api::V2::TagGroupResource (readonly)

Note:

This relationship is read-only.

The primary tag group associated with the tag layout template. This relationship represents the group of tags that the layout template is based on.

Returns:



39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
 
# File 'app/resources/api/v2/tag_layout_template_resource.rb', line 39

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#uuid ⇒ Object (readonly)

A filter to return only tag_layout_templates with the given UUID.

Examples:

Filtering tag_layout_templates by UUID

GET /api/v2/tag_layout_templates?filter[uuid]=11111111-2222-3333-4444-555555666666


56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
 
# File 'app/resources/api/v2/tag_layout_template_resource.rb', line 56

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#walking_by ⇒ String (readonly)

Note:

This attribute is read-only.

The algorithm that defines the way of walking through the tag layout. This attribute specifies how the tags are indexed within the layout.

Returns:

  • (String) —

    The name of the algorithm defining the walking method.



76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
 
# File 'app/resources/api/v2/tag_layout_template_resource.rb', line 76

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

Instance Method Details

#enabled ⇒ Boolean

Filter to return only enabled tag layout templates. This filter allows users to specify if only active tag layouts should be returned.

Examples:

Using the filter: GET /api/v2/tag_layout_templates?enabled=true

Returns:

  • (Boolean) —

    Whether the tag layout template is enabled or not.



87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
 
# File 'app/resources/api/v2/tag_layout_template_resource.rb', line 87

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end