Class: Api::V2::SpecificTubeRackCreationResource

Inherits:
BaseResource
  • Object
show all
Defined in:
app/resources/api/v2/specific_tube_rack_creation_resource.rb

Overview

Note:

This resource cannot be modified after creation: its endpoint will not accept PATCH requests.

Note:

Access this resource via the /api/v2/specific_tube_rack_creations/ endpoint.

This resource represents the api v2 resource for the specific tube rack creations endpoint. This endpoint is used to create tube rack instances and the racked tubes within them.

Provides a JSON:API representation of SpecificTubeRackCreation.

For more information about JSON:API see the JSON:API Specifications or look at the JSONAPI::Resources package for Sequencescape's implementation of the JSON:API standard.

Instance Attribute Summary collapse

Class Method Summary collapse

Instance Method Summary collapse

Methods inherited from BaseResource

apply_includes, default_includes, inclusions, resolve_relationship_names_to_relations, updatable_fields

Instance Attribute Details

#children ⇒ Array<TubeRackResource> (readonly)

Returns An array of tube racks that were created.

Returns:



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# File 'app/resources/api/v2/specific_tube_rack_creation_resource.rb', line 91

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#parent_uuids=(value) ⇒ Void (writeonly)

Deprecated.

Use the parents relationship instead.

This is declared for convenience where the parent is not available to set as a relationship. Setting this attribute alongside the parents relationship will prefer the relationship value. and tubes created.

Parameters:

  • value (Array<String>) —

    The UUIDs of labware that will be the parents for all tube racks

Returns:

  • (Void)

See Also:



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# File 'app/resources/api/v2/specific_tube_rack_creation_resource.rb', line 29

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#parents ⇒ Array<LabwareResource>

Note:

This relationship is required.

Setting this relationship alongside the parent_uuids attribute will override the attribute value.

Returns:

  • (Array<LabwareResource>) —

    An array of the parents of the tubes being created.



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# File 'app/resources/api/v2/specific_tube_rack_creation_resource.rb', line 97

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#tube_rack_attributes=(value) ⇒ Void (writeonly)

{ :tube_rack_name=>"Tube Rack", :tube_rack_barcode=>"TR00000001", :tube_rack_purpose_uuid=>"0ab4c9cc-4dad-11ef-8ca3-82c61098d1a1", :racked_tubes=>[ { :tube_barcode=>"SQ45303801", :tube_name=>"SEQ:NT749R:A1", :tube_purpose_uuid=>"0ab4c9cc-4dad-11ef-8ca3-82c61098d1a1", :tube_position=>"A1", :parent_uuids=>["bd49e7f8-80a1-11ef-bab6-82c61098d1a0"] }, etc... more tubes ] }, etc... more tube racks

Examples:

[

Parameters:

  • value (Array<Hash>) —

    Hashes defining the attributes to apply to each tube rack and the tubes within that are being created. This is used to set custom attributes on the tube racks, such as name. As well as to create the tubes within the tube rack and link them together.

Returns:

  • (Void) 


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# File 'app/resources/api/v2/specific_tube_rack_creation_resource.rb', line 59

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#user ⇒ UserResource

Note:

This relationship is required.

Setting this relationship alongside the user_uuid attribute will override the attribute value.

Returns:

  • (UserResource) —

    The user who initiated the creation of tubes.



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# File 'app/resources/api/v2/specific_tube_rack_creation_resource.rb', line 103

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#user_uuid=(value) ⇒ Void (writeonly)

Deprecated.

Use the user relationship instead.

This is declared for convenience where the user is not available to set as a relationship. Setting this attribute alongside the user relationship will prefer the relationship value.

Parameters:

  • value (String) —

    The UUID of the user who initiated the creation of tubes.

Returns:

  • (Void)

See Also:



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# File 'app/resources/api/v2/specific_tube_rack_creation_resource.rb', line 75

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#uuid ⇒ String (readonly)

Returns The UUID of the AssetCreation instance.

Returns:

  • (String) —

    The UUID of the AssetCreation instance.



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# File 'app/resources/api/v2/specific_tube_rack_creation_resource.rb', line 83

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

Class Method Details

.creatable_fields(context) ⇒ Object 



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# File 'app/resources/api/v2/specific_tube_rack_creation_resource.rb', line 105

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

Instance Method Details

#fetchable_fields ⇒ Object 



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# File 'app/resources/api/v2/specific_tube_rack_creation_resource.rb', line 110

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end