Class: Api::V2::Sapio::StudiesController

Inherits:
JSONAPI::ResourceController
  • Object
show all
Includes:
Concerns::ApiKeyAuthenticatable
Defined in:
app/controllers/api/v2/sapio/studies_controller.rb

Overview

Provides a JSON:API endpoint for Sapio to query Studies by name pattern. This endpoint is feature-flagged and returns a limited result set (max 20 studies).

Constant Summary collapse

RESULTS_RANGE =

The range of valid values for the custom maxResults query parameter to override the default maximum number of search results returned by the index action (Api::V2::BaseResource::MAX_RESULTS).

1..1000

Instance Method Summary collapse

Instance Method Details

#create ⇒ void

This method returns an undefined value.

Creates a new externally managed Study, or, when the y26_245_sapio_study_upsert feature flag is enabled and the supplied uuid already belongs to an existing Study, marks that Study as externally managed instead (see StudyProcessor#create_resource).



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# File 'app/controllers/api/v2/sapio/studies_controller.rb', line 42

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#index ⇒ void

This method returns an undefined value.

Enforces a name search constraint on resource index listing.



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# File 'app/controllers/api/v2/sapio/studies_controller.rb', line 29

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#update ⇒ void

This method returns an undefined value.

Updates an existing Study.



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# File 'app/controllers/api/v2/sapio/studies_controller.rb', line 50

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end