Class: Accessionable::Base::Tag::FieldSerializer

Inherits:
Object
  • Object
show all
Defined in:
app/models/accessionable/base.rb

Overview

Value serialization for accessioning XML generation It will return the same value without any changes and it applies to all tags

Direct Known Subclasses

FieldCollectionDate, FieldCountryOfOrigin

Constant Summary collapse

NOT_COLLECTED = 
'not collected'
NOT_PROVIDED = 
'not provided'
RESTRICTED_ACCESS = 
'restricted access'
NOT_APPLICABLE_CONTROL_SAMPLE = 
'not applicable: control sample'
NOT_APPLICABLE_SAMPLE_GROUP = 
'not applicable: sample group'
MISSING_SYNTHETIC_CONSTRUCT = 
'missing: synthetic construct'
MISSING_LAB_STOCK = 
'missing: lab stock'
MISING_THIRD_PARTY_DATA = 
'missing: third party data'
MISSING_DATA_AGGREEMENT_PRE2023 = 
'missing: data agreement established pre-2023'
MISSING_ENDANGERED_SPECIES = 
'missing: endangered species'
MISSING_HUMAN_IDENTIFIABLE = 
'missing: human-identifiable'
MISSING_CONTROL_SAMPLE = 
'missing: control sample'
MISSING_SAMPLE_GROUP = 
'missing: sample group'
OTHER_DEFAULT_SETTINGS = 
[
  NOT_COLLECTED,
  NOT_PROVIDED,
  RESTRICTED_ACCESS,
  NOT_APPLICABLE_CONTROL_SAMPLE,
  NOT_APPLICABLE_SAMPLE_GROUP,
  MISSING_SYNTHETIC_CONSTRUCT,
  MISSING_LAB_STOCK,
  MISING_THIRD_PARTY_DATA,
  MISSING_DATA_AGGREEMENT_PRE2023,
  MISSING_ENDANGERED_SPECIES,
  MISSING_HUMAN_IDENTIFIABLE,
  MISSING_CONTROL_SAMPLE,
  MISSING_SAMPLE_GROUP
].freeze

Instance Method Summary collapse

Instance Method Details

#applies_to?(_name) ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'app/models/accessionable/base.rb', line 111

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#incorrect_format_value ⇒ Object 



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# File 'app/models/accessionable/base.rb', line 115

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end

#value_for(value) ⇒ Object 



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# File 'app/models/accessionable/base.rb', line 107

has_metadata do
  # NOTE: The following attribute is not required for Microarray Genotyping.
  # I think this might be broken and suggests that there should be separate classes for project: one for
  # next-gen sequencing that includes this attribute in it's metadata, and one for microarray genotyping
  # that doesn't.
  include ProjectManager::Associations
  include BudgetDivision::Associations

  custom_attribute(:project_cost_code, required: true)
  custom_attribute(:funding_comments)
  custom_attribute(:collaborators)
  custom_attribute(:external_funding_source)
  custom_attribute(:sequencing_budget_cost_centre)
  custom_attribute(:project_funding_model, in: PROJECT_FUNDING_MODELS)
  custom_attribute(:gt_committee_tracking_id)

  before_validation do |record|
    record.project_cost_code = nil if record.project_cost_code.blank?
    record.project_funding_model = nil if record.project_funding_model.blank?
  end
end