Class: RunCsv::OntSampleSheet

Inherits:
Object
  • Object
show all
Includes:
DataStructureBuilder
Defined in:
app/exchanges/run_csv/ont_sample_sheet.rb

Overview

RunCsv::OntSampleSheet Used to generate sample sheets specific to the ONT pipeline For usage documentation see ‘app/exchanges/README.md’

Instance Method Summary collapse

Methods included from DataStructureBuilder

#data_structure, #instance_value

Instance Method Details

#generate ⇒ Object

return a CSV String using run and configuration attributes to generate headers and data



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# File 'app/exchanges/run_csv/ont_sample_sheet.rb', line 13

def generate
  run = object
  CSV.generate do |csv|
    csv << csv_headers

    run.flowcells.each do |flowcell|
      csv_sample_rows(flowcell).each { |sample_row| csv << sample_row }
    end
  end
end